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Colias eurytheme Phosphoglucose isomerase. Homodimer from 4-5(18) genotype.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U0E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 297 0.1M lithium sulfate, 22% PEG 4000, 0.2M Tris-Cl pH 7.4.
Crystal Properties Matthews coefficient Solvent content 2.35 47.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.287 α = 90 b = 115.495 β = 101.7 c = 135.079 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M 2011-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.98 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 41.19 77.68 8.99 2 270174
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U0E 1.5 41.19 270174 14357 77.68 0.1849 0.18315 0.1828 0.2179 0.2174 RANDOM 18.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.01 0.23 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.285 r_dihedral_angle_4_deg 18.654 r_dihedral_angle_3_deg 13.867 r_dihedral_angle_1_deg 6.359 r_long_range_B_refined 4.42 r_long_range_B_other 4.399 r_scangle_other 3.623 r_scbond_it 2.441 r_scbond_other 2.441 r_angle_refined_deg 1.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.285 r_dihedral_angle_4_deg 18.654 r_dihedral_angle_3_deg 13.867 r_dihedral_angle_1_deg 6.359 r_long_range_B_refined 4.42 r_long_range_B_other 4.399 r_scangle_other 3.623 r_scbond_it 2.441 r_scbond_other 2.441 r_angle_refined_deg 1.9 r_mcangle_it 1.853 r_mcangle_other 1.853 r_mcbond_it 1.308 r_mcbond_other 1.308 r_angle_other_deg 0.93 r_chiral_restr 0.124 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17415 Nucleic Acid Atoms Solvent Atoms 1093 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOLREP phasing HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling