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Crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase (FabG) (G141A) from Vibrio cholerae in complex with NADPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 289 0.17 M Ammonium Acetate,0.085 M Sodium Citrate:HCl,25.5% (w/v) PEG 4000,15% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.46 49.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.904 α = 90 b = 110.337 β = 90 c = 117.482 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.9786 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 27 98.8 0.077 0.084 0.034 7.4 6 52121
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 93.9 0.606 0.664 0.268 0.881 5.4 2431
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.21 27 49545 2512 98.1 0.2107 0.2091 0.2127 0.2408 0.241 RANDOM 65.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.64 -6.09 1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.352 r_dihedral_angle_4_deg 18.422 r_dihedral_angle_3_deg 13.839 r_dihedral_angle_1_deg 5.967 r_mcangle_it 3.675 r_mcbond_it 2.383 r_mcbond_other 2.383 r_angle_refined_deg 1.601 r_angle_other_deg 1.245 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.352 r_dihedral_angle_4_deg 18.422 r_dihedral_angle_3_deg 13.839 r_dihedral_angle_1_deg 5.967 r_mcangle_it 3.675 r_mcbond_it 2.383 r_mcbond_other 2.383 r_angle_refined_deg 1.601 r_angle_other_deg 1.245 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6704 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 128
Software Software Software Name Purpose HKL-3000 data reduction REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data scaling MOLREP phasing DENZO data reduction SCALEPACK data scaling