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Crystal structure of beta-ketoacyl-acyl carrier protein reductase (FabG)(G141A) from Vibrio cholerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 289 2.4M Ammonium phosphate, 0.1M Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.01 38.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.825 α = 90 b = 61.825 β = 90 c = 384.704 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Beyllium Lenses 2014-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.9786 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 27 98.6 0.091 0.1 0.041 8.1 5.8 32068
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 97.2 0.565 0.647 0.307 0.604 4.1 1553
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 26.94 32068 1504 97.12 0.2004 0.1985 0.2393 0.2526 RANDOM 37.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.94 -7.94 15.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.595 r_dihedral_angle_3_deg 14.272 r_dihedral_angle_4_deg 12.882 r_dihedral_angle_1_deg 5.723 r_mcangle_it 3.053 r_mcbond_it 1.935 r_mcbond_other 1.935 r_angle_refined_deg 1.404 r_angle_other_deg 1.125 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.595 r_dihedral_angle_3_deg 14.272 r_dihedral_angle_4_deg 12.882 r_dihedral_angle_1_deg 5.723 r_mcangle_it 3.053 r_mcbond_it 1.935 r_mcbond_other 1.935 r_angle_refined_deg 1.404 r_angle_other_deg 1.125 r_chiral_restr 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6237 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 10
Software Software Software Name Purpose HKL-3000 data reduction REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data scaling MOLREP phasing DENZO data reduction SCALEPACK data scaling