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Co-complex structure of the F4 fimbrial adhesin FaeG variant ac with llama single domain antibody V1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HLR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.2 M Potassium bromide, 0.1 M Sodium acetate pH 5.5, 15 % w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.78 55.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.483 α = 90 b = 145.483 β = 90 c = 38.847 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.98 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 47.62 99.9 24.8 11.2 68481
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 99 4.2 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3HLR 1.55 47.62 65014 3467 99.92 0.17008 0.16882 0.1791 0.19326 0.2022 RANDOM 34.314
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.1 -0.19 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.224 r_dihedral_angle_4_deg 18.331 r_dihedral_angle_3_deg 13.692 r_long_range_B_refined 7.614 r_long_range_B_other 7.552 r_dihedral_angle_1_deg 6.999 r_scangle_other 4.416 r_scbond_it 3.021 r_scbond_other 2.983 r_angle_refined_deg 2.715
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.224 r_dihedral_angle_4_deg 18.331 r_dihedral_angle_3_deg 13.692 r_long_range_B_refined 7.614 r_long_range_B_other 7.552 r_dihedral_angle_1_deg 6.999 r_scangle_other 4.416 r_scbond_it 3.021 r_scbond_other 2.983 r_angle_refined_deg 2.715 r_mcangle_it 2.597 r_mcangle_other 2.597 r_mcbond_other 1.815 r_mcbond_it 1.814 r_angle_other_deg 1.023 r_chiral_restr 0.136 r_bond_refined_d 0.027 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2748 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing