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Crystal structure of Glutathione S-transferase domain protein from Haliangium ochraceum DSM 14365
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 289 0.2M Calcium Chloride,
0.1M This-Cl
20% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.8 56.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.4 α = 90 b = 130.4 β = 90 c = 70.147 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97924 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 50 99.9 0.132 0.133 0.058 7.3 6.1 24264 24250 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.4 100 0.986 0.467 0.772 5.3 1212
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.36 36.95 22422 1205 97.19 0.189 0.1864 0.2007 0.2376 0.2496 RANDOM 24.276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.142 r_dihedral_angle_4_deg 19.291 r_dihedral_angle_3_deg 15.095 r_dihedral_angle_1_deg 5.334 r_mcangle_it 2.065 r_angle_refined_deg 1.257 r_mcbond_it 1.175 r_mcbond_other 1.175 r_angle_other_deg 0.763 r_chiral_restr 0.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.142 r_dihedral_angle_4_deg 19.291 r_dihedral_angle_3_deg 15.095 r_dihedral_angle_1_deg 5.334 r_mcangle_it 2.065 r_angle_refined_deg 1.257 r_mcbond_it 1.175 r_mcbond_other 1.175 r_angle_other_deg 0.763 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3581 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 40
Software Software Software Name Purpose HKL-3000 data reduction SBC-Collect data collection REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data scaling Coot model building HKL-3000 phasing SCALEPACK data scaling