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Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Crystallization Crystal Properties Matthews coefficient Solvent content 3.31 62.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 209.92 α = 90 b = 449.9 β = 90 c = 624.9 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r 2012-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 1 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 39.57 95.56 797158 132578 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.385 87.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.3 39.57 132578 41956 95.56 0.228 0.2254 0.2303 0.2785 0.2784 RANDOM 92.8816
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 1.5 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.406 r_dihedral_angle_3_deg 20.774 r_dihedral_angle_4_deg 17.415 r_mcangle_it 9.934 r_dihedral_angle_1_deg 8.109 r_mcbond_it 5.891 r_mcbond_other 5.89 r_angle_refined_deg 1.449 r_angle_other_deg 1.242 r_chiral_restr 0.145
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.406 r_dihedral_angle_3_deg 20.774 r_dihedral_angle_4_deg 17.415 r_mcangle_it 9.934 r_dihedral_angle_1_deg 8.109 r_mcbond_it 5.891 r_mcbond_other 5.89 r_angle_refined_deg 1.449 r_angle_other_deg 1.242 r_chiral_restr 0.145 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19157 Nucleic Acid Atoms 37358 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOLREP phasing XDS data reduction XDS data scaling