☰ Navigation Tabs
Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AVY pdb entries 2AVY, 2AW4, 2AW7, 2AWB experimental model PDB 2AW4 pdb entries 2AVY, 2AW4, 2AW7, 2AWB experimental model PDB 2AW7 pdb entries 2AVY, 2AW4, 2AW7, 2AWB experimental model PDB 2AWB pdb entries 2AVY, 2AW4, 2AW7, 2AWB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 batch 7.5 277 MPD, PEG 8000, MGCL2, NH4CL, SPERMINE, SPERMIDINE, TRIS, EDTA, pH 7.5, batch, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.62 66.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 211.783 α = 90 b = 395.223 β = 90 c = 744.383 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 12.3.1 1.116 ALS 12.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.22 70 75.5 997175 753057 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.22 3.26 11.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT pdb entries 2AVY, 2AW4, 2AW7, 2AWB 3.22 70 2 997175 753057 37290 0.287 0.2588 0.32 0.2867 Random 105.753
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation c_angle_deg 0.93743 c_bond_d 0.002842
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18538 Nucleic Acid Atoms 33316 Solvent Atoms Heterogen Atoms 370
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction ADSC data collection DENZO data reduction SCALEPACK data scaling CNS phasing