X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4BIYPDB ENTRY 4BIY AND STRUCTURE OF MOUSE PP1G IN COMPLEX WITH TRUNCATED HUMAN PPP1R15B INCLUDING 631-660

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
170.2M CACL2, 0.1 M HEPES, PH7.0, 20% PEG6000
Crystal Properties
Matthews coefficientSolvent content
2.856.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.91α = 90
b = 149.93β = 91.03
c = 318.72γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPILATUS 2MMIRRORS2014-05-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-1DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
17.8882.79980.147.23.451111.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
17.888.0899.20.681.63.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4BIY AND STRUCTURE OF MOUSE PP1G IN COMPLEX WITH TRUNCATED HUMAN PPP1R15B INCLUDING 631-6607.8882.79511129097.720.37180.370240.39976RANDOM388.064
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.46-19.35-1.83-1.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.658
r_dihedral_angle_4_deg13.999
r_dihedral_angle_3_deg11.608
r_dihedral_angle_1_deg5.432
r_scbond_it4.751
r_angle_other_deg4.337
r_mcangle_it3.888
r_mcbond_it2.101
r_mcbond_other2.101
r_angle_refined_deg1.272
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.658
r_dihedral_angle_4_deg13.999
r_dihedral_angle_3_deg11.608
r_dihedral_angle_1_deg5.432
r_scbond_it4.751
r_angle_other_deg4.337
r_mcangle_it3.888
r_mcbond_it2.101
r_mcbond_other2.101
r_angle_refined_deg1.272
r_chiral_restr0.08
r_bond_other_d0.024
r_gen_planes_other0.012
r_bond_refined_d0.01
r_gen_planes_refined0.01
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms26765
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms300

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
CCP4Iphasing