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X-ray structure of the N-terminal domain of the flocculin Flo11 from Saccharomyces cerevisiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 PROTEIN WAS CRYSTALLIZED FROM 100 MM NA3CITRATE2H2O, PH 6.0, 1 M LI2SO4, 4% PEG 4000; THEN SOAKED IN THIS CONDITION CONTAINING 25 % GLYCERIN ADDITIONALLY FOR CRYOPROTECTION.
Crystal Properties Matthews coefficient Solvent content 2.49 50.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.43 α = 90 b = 54.85 β = 90 c = 120.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2013-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.03 40.46 98.5 0.03 18.7 3.8 98507 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.03 1.09 93.6 0.38 2.6 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.03 40.54 97267 1239 98.31 0.12882 0.12863 0.1387 0.14416 0.1493 RANDOM 14.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.65 -0.49
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 56.703 r_dihedral_angle_2_deg 37.244 r_sphericity_bonded 14.238 r_dihedral_angle_3_deg 10.14 r_dihedral_angle_1_deg 6.631 r_rigid_bond_restr 2.489 r_scbond_it 1.831 r_angle_refined_deg 1.43 r_mcangle_it 1.397 r_mcbond_it 1.078
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 56.703 r_dihedral_angle_2_deg 37.244 r_sphericity_bonded 14.238 r_dihedral_angle_3_deg 10.14 r_dihedral_angle_1_deg 6.631 r_rigid_bond_restr 2.489 r_scbond_it 1.831 r_angle_refined_deg 1.43 r_mcangle_it 1.397 r_mcbond_it 1.078 r_mcbond_other 1.07 r_angle_other_deg 0.75 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1416 Nucleic Acid Atoms Solvent Atoms 284 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHENIX phasing