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X-ray structure of the N-terminal domain of the flocculin Flo11 from Saccharomyces cerevisiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 PROTEIN WAS CRYSTALLIZED FROM 30% PEG 400, 100 MM MGCL2, 100 MM NAHEPES, PH 7.5.
Crystal Properties Matthews coefficient Solvent content 2.2 44.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.45 α = 90 b = 54.83 β = 90 c = 121.91 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2011-06-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.89 40.76 99.7 0.06 13.1 5.1 156350 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.89 0.94 99.6 0.78 2 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 0.89 40.76 151392 4675 99.34 0.12699 0.12677 0.1406 0.13399 0.1502 RANDOM 15.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 -0.13 -0.65
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 64.203 r_dihedral_angle_2_deg 37.987 r_sphericity_bonded 21.248 r_dihedral_angle_3_deg 9.98 r_dihedral_angle_1_deg 6.612 r_rigid_bond_restr 3.698 r_mcangle_it 2.099 r_scbond_it 2.011 r_angle_refined_deg 1.76 r_mcbond_it 1.739
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 64.203 r_dihedral_angle_2_deg 37.987 r_sphericity_bonded 21.248 r_dihedral_angle_3_deg 9.98 r_dihedral_angle_1_deg 6.612 r_rigid_bond_restr 3.698 r_mcangle_it 2.099 r_scbond_it 2.011 r_angle_refined_deg 1.76 r_mcbond_it 1.739 r_mcbond_other 1.645 r_angle_other_deg 0.892 r_chiral_restr 0.104 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1503 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 8
Software Software Software Name Purpose XDS data reduction SCALA data scaling SHELXCDE phasing ARP/wARP phasing REFMAC refinement