☰ Navigation Tabs
Binding mode, selectivity and potency of N-indolyl-oxopyridinyl-4- amino-propanyl-based inhibitors targeting Trypanosoma cruzi CYP51
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4C0C PDB ENTRY 4C0C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.1 M SODIUM ACETATE PH 5.6, 0.25 M AMMONIUM SULFATE, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.58 52.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.115 α = 90 b = 128.115 β = 90 c = 117.781 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESERCH MIRRORS 2014-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 117.78 100 0.22 11.5 15.2 20811 0.5 55.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.61 100 1.8 15.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4C0C 2.48 110.95 19783 1001 99.96 0.19479 0.19181 0.1988 0.2525 0.249 RANDOM 41.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.09 -0.55 -1.09 3.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.11 r_dihedral_angle_4_deg 21.043 r_dihedral_angle_3_deg 15.851 r_dihedral_angle_1_deg 6.298 r_mcangle_it 4.239 r_scbond_it 3.398 r_mcbond_it 2.777 r_mcbond_other 2.768 r_angle_refined_deg 1.687 r_angle_other_deg 0.859
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.11 r_dihedral_angle_4_deg 21.043 r_dihedral_angle_3_deg 15.851 r_dihedral_angle_1_deg 6.298 r_mcangle_it 4.239 r_scbond_it 3.398 r_mcbond_it 2.777 r_mcbond_other 2.768 r_angle_refined_deg 1.687 r_angle_other_deg 0.859 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3397 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms 107
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing