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Burkholderia pseudomallei heptokinase WcbL, D-mannose complex.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.5 M NACL, 10 MM HEPES PH 7
Crystal Properties Matthews coefficient Solvent content 3.26 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.1 α = 90 b = 116.33 β = 90 c = 168.09 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2014-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 69.48 99.6 0.12 7.5 6.5 73109
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.99 99.1 0.62 2.2 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.94 69.48 69344 3714 99.54 0.19552 0.19334 0.1937 0.23722 0.2378 RANDOM 29.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -1.68 1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.587 r_dihedral_angle_4_deg 18.422 r_dihedral_angle_3_deg 14.755 r_dihedral_angle_1_deg 5.273 r_scbond_it 4.991 r_mcangle_it 4.854 r_mcbond_it 3.77 r_angle_refined_deg 1.218 r_chiral_restr 0.084 r_bond_refined_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.587 r_dihedral_angle_4_deg 18.422 r_dihedral_angle_3_deg 14.755 r_dihedral_angle_1_deg 5.273 r_scbond_it 4.991 r_mcangle_it 4.854 r_mcbond_it 3.77 r_angle_refined_deg 1.218 r_chiral_restr 0.084 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5306 Nucleic Acid Atoms Solvent Atoms 797 Heterogen Atoms 32
Software Software Software Name Purpose xia2 data reduction XDS data reduction Aimless data scaling SHELX phasing ARP/wARP phasing REFMAC refinement