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New Crystal Form of Glucose Isomerase Grown in Short Peptide Supramolecular Hydrogels
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OAD PDB ENTRY 1OAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 GEL COUNTERDIFFUSION: 1 M AMMONIUM SULPHATE, 10 MM TRIS PH 8.5
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.999 α = 90 b = 93.677 β = 90 c = 99.215 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2014-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 49.61 99 0.09 16.7 12 247728 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 91.6 0.54 3.2 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OAD 1.2 99.21 235253 12309 99.33 0.10784 0.10648 0.1096 0.13237 0.1358 RANDOM 12.725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.15 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.031 r_sphericity_free 28.399 r_dihedral_angle_4_deg 17.74 r_dihedral_angle_3_deg 12.464 r_sphericity_bonded 9.689 r_rigid_bond_restr 7.357 r_dihedral_angle_1_deg 5.561 r_long_range_B_refined 3.717 r_long_range_B_other 3.486 r_scangle_other 3.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.031 r_sphericity_free 28.399 r_dihedral_angle_4_deg 17.74 r_dihedral_angle_3_deg 12.464 r_sphericity_bonded 9.689 r_rigid_bond_restr 7.357 r_dihedral_angle_1_deg 5.561 r_long_range_B_refined 3.717 r_long_range_B_other 3.486 r_scangle_other 3.273 r_scbond_it 2.959 r_scbond_other 2.958 r_angle_refined_deg 1.926 r_angle_other_deg 1.64 r_mcangle_other 1.6 r_mcangle_it 1.587 r_mcbond_it 1.377 r_mcbond_other 1.346 r_chiral_restr 0.119 r_bond_refined_d 0.063 r_gen_planes_refined 0.012 r_bond_other_d 0.011 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6087 Nucleic Acid Atoms Solvent Atoms 937 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing