☰ Navigation Tabs
CRYSTAL STRUCTURE OF LISTERIA MONOCYTOGENES GTP CYCLOHYDROLASE I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FB1 PDB ENTRY 1FB1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.3 0.1 M HEPES PH 7.3, 1.33 M SODIUM CITRATE
Crystal Properties Matthews coefficient Solvent content 2.33 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.249 α = 90 b = 141.847 β = 104.61 c = 90.776 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KB-MIRRORS 2012-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 99.7 0.07 19.2 6.9 74531
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 99.8 0.57 3.5 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FB1 2.4 87.84 70754 3752 99.61 0.19415 0.19245 0.2046 0.22593 0.2312 RANDOM 49.645
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.08 -3.5 -2.66 -1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.344 r_dihedral_angle_4_deg 20.666 r_dihedral_angle_3_deg 17.325 r_mcangle_it 6.92 r_scbond_it 6.915 r_dihedral_angle_1_deg 5.991 r_mcbond_it 4.936 r_mcbond_other 4.932 r_angle_other_deg 1.839 r_angle_refined_deg 1.773
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.344 r_dihedral_angle_4_deg 20.666 r_dihedral_angle_3_deg 17.325 r_mcangle_it 6.92 r_scbond_it 6.915 r_dihedral_angle_1_deg 5.991 r_mcbond_it 4.936 r_mcbond_other 4.932 r_angle_other_deg 1.839 r_angle_refined_deg 1.773 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_bond_other_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14475 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing