4UOA

Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin Met29Ile mutant


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4UO4PDB ENTRY 4UO4

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.4664.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.678α = 90
b = 99.678β = 90
c = 397.212γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.546.6499.90.19.45.2268652
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.61000.652.55.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4UO42.5132.425387134199.260.239130.237770.26508RANDOM60.453
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.860.931.86-6.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.437
r_dihedral_angle_3_deg17.436
r_dihedral_angle_4_deg16.271
r_dihedral_angle_1_deg5.982
r_mcangle_it1.821
r_scbond_it1.416
r_angle_refined_deg1.26
r_mcbond_it1.03
r_mcbond_other1.029
r_angle_other_deg0.846
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.437
r_dihedral_angle_3_deg17.436
r_dihedral_angle_4_deg16.271
r_dihedral_angle_1_deg5.982
r_mcangle_it1.821
r_scbond_it1.416
r_angle_refined_deg1.26
r_mcbond_it1.03
r_mcbond_other1.029
r_angle_other_deg0.846
r_chiral_restr0.097
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3904
Nucleic Acid Atoms
Solvent Atoms40
Heterogen Atoms240

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing