4UO1

Structure of the A_Equine_Richmond_07 H3 haemagglutinin in complex with 3SLN


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4UO0PDB ENTRY 4UO0

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.9658.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.812α = 90
b = 129.937β = 90
c = 194.117γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1310897.30.135.333396752
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.198.80.541.953.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4UO03107.9837077195895.840.27750.274870.32679RANDOM81.449
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.38-11.7510.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.329
r_dihedral_angle_3_deg11.005
r_dihedral_angle_4_deg10.379
r_dihedral_angle_1_deg4.231
r_angle_refined_deg0.873
r_angle_other_deg0.755
r_mcangle_it0.743
r_mcbond_it0.403
r_mcbond_other0.403
r_scbond_it0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.329
r_dihedral_angle_3_deg11.005
r_dihedral_angle_4_deg10.379
r_dihedral_angle_1_deg4.231
r_angle_refined_deg0.873
r_angle_other_deg0.755
r_mcangle_it0.743
r_mcbond_it0.403
r_mcbond_other0.403
r_scbond_it0.305
r_chiral_restr0.088
r_bond_refined_d0.004
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11739
Nucleic Acid Atoms
Solvent Atoms71
Heterogen Atoms714

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing