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Mtb TMK in complex with compound 40
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G3U PDB ENTRY 1G3U
Crystallization Crystal Properties Matthews coefficient Solvent content 2.65 53.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.513 α = 90 b = 75.513 β = 90 c = 71.817 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU CCD MIRRORS 2010-12-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 72 99.7 0.06 11.2 2.9 23875 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 99.7 0.37 2.6 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1G3U 2.18 65.4 22586 1217 99.58 0.18339 0.18184 0.1857 0.21248 0.2149 RANDOM 34.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.28 0.56 -0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.406 r_dihedral_angle_4_deg 19.911 r_dihedral_angle_3_deg 13.764 r_dihedral_angle_1_deg 5.067 r_scangle_it 3.087 r_scbond_it 1.822 r_angle_refined_deg 1.281 r_mcangle_it 1.156 r_angle_other_deg 0.86 r_mcbond_it 0.621
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.406 r_dihedral_angle_4_deg 19.911 r_dihedral_angle_3_deg 13.764 r_dihedral_angle_1_deg 5.067 r_scangle_it 3.087 r_scbond_it 1.822 r_angle_refined_deg 1.281 r_mcangle_it 1.156 r_angle_other_deg 0.86 r_mcbond_it 0.621 r_mcbond_other 0.116 r_chiral_restr 0.06 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2730 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing