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Structure of the bovine atadenovirus type 4 fibre head protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% (W/V) PEG3350, 200 MM KSCN, 50 MM NACL, 10 MM TRIS-HCL PH 7.5, 5% (V/V) GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.33 α = 117.11 b = 48.19 β = 95.56 c = 52.07 γ = 110.17
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M CYLINDRICAL GRAZING 2014-02-21 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M CYLINDRICAL GRAZING 2014-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29 2 SYNCHROTRON ALBA BEAMLINE XALOC ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.17 44.15 91.2 0.03 15.7 3.6 103174 10.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.17 1.21 86.7 0.35 2.6 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 1.17 44.15 100391 2782 91.17 0.11699 0.11613 0.1385 0.14595 0.144 THIN SHELLS 19.611
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 0.11 0.43 0.28 -0.22
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 48.205 r_dihedral_angle_2_deg 36.734 r_dihedral_angle_4_deg 15.692 r_sphericity_bonded 13.113 r_dihedral_angle_3_deg 12.653 r_dihedral_angle_1_deg 7.083 r_scangle_it 3.69 r_scbond_it 3.062 r_rigid_bond_restr 2.563 r_mcangle_it 2.389
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 48.205 r_dihedral_angle_2_deg 36.734 r_dihedral_angle_4_deg 15.692 r_sphericity_bonded 13.113 r_dihedral_angle_3_deg 12.653 r_dihedral_angle_1_deg 7.083 r_scangle_it 3.69 r_scbond_it 3.062 r_rigid_bond_restr 2.563 r_mcangle_it 2.389 r_mcbond_it 1.98 r_mcbond_other 1.973 r_angle_refined_deg 1.549 r_angle_other_deg 0.764 r_symmetry_vdw_refined 0.275 r_nbd_refined 0.251 r_nbtor_refined 0.179 r_nbd_other 0.176 r_symmetry_hbond_refined 0.15 r_symmetry_vdw_other 0.14 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.095 r_nbtor_other 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2715 Nucleic Acid Atoms Solvent Atoms 441 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling autoSHARP phasing