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The crystal structure of cytochrome P450 105D7 from Streptomyces avermitilis in complex with Diclofenac
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 Sodium chloride, Na/K phosphate, PEG200, 40% tert-butanol
Crystal Properties Matthews coefficient Solvent content 4.26 71.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.897 α = 90 b = 139.897 β = 90 c = 65.268 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.980 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 44.4 99.2 32.9 10.8 37612
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 100 4.4 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 44.4 37259 1860 99.11 0.1794 0.1769 0.1862 0.2283 0.2382 RANDOM 41.988
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.104 r_dihedral_angle_4_deg 22.258 r_dihedral_angle_3_deg 16.398 r_dihedral_angle_1_deg 6.206 r_mcangle_it 4.323 r_mcbond_it 3.414 r_mcbond_other 3.413 r_angle_refined_deg 2.134 r_angle_other_deg 1.09 r_chiral_restr 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.104 r_dihedral_angle_4_deg 22.258 r_dihedral_angle_3_deg 16.398 r_dihedral_angle_1_deg 6.206 r_mcangle_it 4.323 r_mcbond_it 3.414 r_mcbond_other 3.413 r_angle_refined_deg 2.134 r_angle_other_deg 1.09 r_chiral_restr 0.142 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_gen_planes_other 0.012 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3044 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 234
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOLREP model building HKL data reduction