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Crystal structure of human peroxisomal delta3,delta2, enoyl-CoA isomerase V349A mutant (ISOA-ECI2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F6Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 100mM HEPES pH 7.5, 10% PEG 6000, 5% MPD
Crystal Properties Matthews coefficient Solvent content 2.07 40.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.609 α = 90 b = 123.69 β = 90 c = 128.933 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 47.61 99.5 0.139 12 7.2 62659
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.95 96.8 1.441 1.5 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2F6Q 1.88 47.6 59362 3172 99.43 0.18645 0.18387 0.1981 0.23441 0.2403 RANDOM 38.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.42 -2.19 -2.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.926 r_dihedral_angle_4_deg 23.363 r_dihedral_angle_3_deg 14.945 r_long_range_B_refined 7.684 r_long_range_B_other 7.683 r_dihedral_angle_1_deg 6.324 r_scangle_other 6.073 r_mcangle_it 4.066 r_mcangle_other 4.066 r_scbond_it 4.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.926 r_dihedral_angle_4_deg 23.363 r_dihedral_angle_3_deg 14.945 r_long_range_B_refined 7.684 r_long_range_B_other 7.683 r_dihedral_angle_1_deg 6.324 r_scangle_other 6.073 r_mcangle_it 4.066 r_mcangle_other 4.066 r_scbond_it 4.01 r_scbond_other 4.01 r_mcbond_it 2.936 r_mcbond_other 2.934 r_angle_refined_deg 1.703 r_angle_other_deg 0.875 r_chiral_restr 0.102 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5769 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement