X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3H47 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP829010% w/v PEG 8K, 0.1M imidazole
Crystal Properties
Matthews coefficientSolvent content
3.1460.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 135.38α = 90
b = 138.06β = 90
c = 211.85γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2014-01-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1346.070.1018.63.277432
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.0697.30.6640.4360.5771.73.14390

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3H473115.6777374388496.60.24680.24570.267RANDOM77.183
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.021.14-1.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.511
r_dihedral_angle_3_deg10.163
r_dihedral_angle_4_deg8.949
r_dihedral_angle_1_deg4.526
r_mcangle_it2.263
r_mcbond_it1.286
r_mcbond_other1.285
r_angle_other_deg0.656
r_angle_refined_deg0.651
r_chiral_restr0.036
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.511
r_dihedral_angle_3_deg10.163
r_dihedral_angle_4_deg8.949
r_dihedral_angle_1_deg4.526
r_mcangle_it2.263
r_mcbond_it1.286
r_mcbond_other1.285
r_angle_other_deg0.656
r_angle_refined_deg0.651
r_chiral_restr0.036
r_bond_refined_d0.004
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms19254
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms1

Software

Software
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
iMOSFLMdata reduction
REFMACrefinement