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Hexameric HIV-1 CA in complex with Nup153 peptide, P212121 crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3H47
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 290 10% w/v PEG 8K, 0.1M imidazole
Crystal Properties Matthews coefficient Solvent content 3.14 60.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.38 α = 90 b = 138.06 β = 90 c = 211.85 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 46.07 0.101 8.6 3.2 77432
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.06 97.3 0.664 0.436 0.577 1.7 3.1 4390
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3H47 3 115.67 77374 3884 96.6 0.2468 0.2457 0.2436 0.267 0.264 RANDOM 77.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 1.14 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.511 r_dihedral_angle_3_deg 10.163 r_dihedral_angle_4_deg 8.949 r_dihedral_angle_1_deg 4.526 r_mcangle_it 2.263 r_mcbond_it 1.286 r_mcbond_other 1.285 r_angle_other_deg 0.656 r_angle_refined_deg 0.651 r_chiral_restr 0.036
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.511 r_dihedral_angle_3_deg 10.163 r_dihedral_angle_4_deg 8.949 r_dihedral_angle_1_deg 4.526 r_mcangle_it 2.263 r_mcbond_it 1.286 r_mcbond_other 1.285 r_angle_other_deg 0.656 r_angle_refined_deg 0.651 r_chiral_restr 0.036 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19254 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose Aimless data scaling PDB_EXTRACT data extraction PHASER phasing iMOSFLM data reduction REFMAC refinement