4U0C

Hexameric HIV-1 CA in complex with Nup153 peptide, P6 crystal form


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3H47 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP9.529030% v/v PEG 400, 0.1 M CHES
Crystal Properties
Matthews coefficientSolvent content
2.5451.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.469α = 90
b = 91.469β = 90
c = 57.001γ = 120
Symmetry
Space GroupP 6

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2014-01-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7735.6795.10.1090.0660.9967.33.224947
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.771.8195.80.9420.5810.3921.63.21411

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3H471.7735.6724942120094.340.19230.19130.2108RANDOM24.339
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.1-0.20.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.392
r_dihedral_angle_4_deg16.002
r_dihedral_angle_3_deg10.909
r_dihedral_angle_1_deg4.269
r_mcangle_it3.094
r_mcbond_it2.009
r_mcbond_other2.004
r_angle_refined_deg0.878
r_angle_other_deg0.728
r_chiral_restr0.051
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.392
r_dihedral_angle_4_deg16.002
r_dihedral_angle_3_deg10.909
r_dihedral_angle_1_deg4.269
r_mcangle_it3.094
r_mcbond_it2.009
r_mcbond_other2.004
r_angle_refined_deg0.878
r_angle_other_deg0.728
r_chiral_restr0.051
r_bond_refined_d0.005
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1672
Nucleic Acid Atoms
Solvent Atoms200
Heterogen Atoms

Software

Software
Software NamePurpose
Aimlessdata scaling
MOSFLMdata reduction
PDB_EXTRACTdata extraction
PHASERphasing
REFMACrefinement