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Crystal structure of Canavalia maritima lectin (ConM) complexed with a dinucleotide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.2 M Magnesium formate dehydrate
Crystal Properties Matthews coefficient Solvent content 3.22 61.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.69 α = 90 b = 140.57 β = 90 c = 199.02 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2013-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.42 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 38.29 99.3 5.4 3.9 31390
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.25 38.29 29618 1560 98.73 0.21859 0.21617 0.2165 0.26706 0.2717 RANDOM 19.529
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 11.97 7.19 -19.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.046 r_sphericity_free 26.077 r_dihedral_angle_3_deg 20.591 r_dihedral_angle_4_deg 17.936 r_dihedral_angle_1_deg 8.524 r_sphericity_bonded 6.15 r_rigid_bond_restr 3.524 r_angle_refined_deg 1.939 r_chiral_restr 0.123 r_bond_refined_d 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.046 r_sphericity_free 26.077 r_dihedral_angle_3_deg 20.591 r_dihedral_angle_4_deg 17.936 r_dihedral_angle_1_deg 8.524 r_sphericity_bonded 6.15 r_rigid_bond_restr 3.524 r_angle_refined_deg 1.939 r_chiral_restr 0.123 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10575 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement