4TX0

The Fk1 domain of FKBP51 in complex with (1S,5S,6R)-10-[(3,5-dichlorophenyl)sulfonyl]-5-(2-methoxyethoxy)-3-(2-methoxyethyl)-3,10-diazabicyclo[4.3.1]decan-2-one


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3O5P 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529336 % PEG-3350, 0.2 M NH4-acetate and 0.1 M HEPES-NaOH pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.3246.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.821α = 90
b = 54.872β = 90
c = 56.665γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-02-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.97857ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.0356.6797.60.0570.0250.99816663589
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.031.0577.30.5770.3340.6942.13.72525

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3O5P1.033063520314997.50.12960.12860.1493RANDOM13.639
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.5-0.611.11
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free33.356
r_dihedral_angle_2_deg28.462
r_dihedral_angle_4_deg19.848
r_dihedral_angle_3_deg13.127
r_sphericity_bonded9.491
r_dihedral_angle_1_deg7.406
r_rigid_bond_restr5.612
r_angle_refined_deg2.127
r_angle_other_deg1.088
r_chiral_restr0.198
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free33.356
r_dihedral_angle_2_deg28.462
r_dihedral_angle_4_deg19.848
r_dihedral_angle_3_deg13.127
r_sphericity_bonded9.491
r_dihedral_angle_1_deg7.406
r_rigid_bond_restr5.612
r_angle_refined_deg2.127
r_angle_other_deg1.088
r_chiral_restr0.198
r_bond_refined_d0.022
r_gen_planes_refined0.009
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms986
Nucleic Acid Atoms
Solvent Atoms227
Heterogen Atoms31

Software

Software
Software NamePurpose
Aimlessdata scaling
MOLREPphasing
PDB_EXTRACTdata extraction
REFMACrefinement
XSCALEdata reduction