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The Fk1 domain of FKBP51 in complex with (1S,5S,6R)-10-[(3,5-dichlorophenyl)sulfonyl]-5-(2-methoxyethoxy)-3-(2-methoxyethyl)-3,10-diazabicyclo[4.3.1]decan-2-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 36 % PEG-3350, 0.2 M NH4-acetate and 0.1 M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.32 46.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.821 α = 90 b = 54.872 β = 90 c = 56.665 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97857 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.03 56.67 97.6 0.057 0.025 0.998 16 6 63589
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.03 1.05 77.3 0.577 0.334 0.694 2.1 3.7 2525
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3O5P 1.03 30 63520 3149 97.5 0.1296 0.1286 0.1493 0.1727 RANDOM 13.639
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.61 1.11
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.356 r_dihedral_angle_2_deg 28.462 r_dihedral_angle_4_deg 19.848 r_dihedral_angle_3_deg 13.127 r_sphericity_bonded 9.491 r_dihedral_angle_1_deg 7.406 r_rigid_bond_restr 5.612 r_angle_refined_deg 2.127 r_angle_other_deg 1.088 r_chiral_restr 0.198
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.356 r_dihedral_angle_2_deg 28.462 r_dihedral_angle_4_deg 19.848 r_dihedral_angle_3_deg 13.127 r_sphericity_bonded 9.491 r_dihedral_angle_1_deg 7.406 r_rigid_bond_restr 5.612 r_angle_refined_deg 2.127 r_angle_other_deg 1.088 r_chiral_restr 0.198 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 986 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms 31
Software Software Software Name Purpose Aimless data scaling MOLREP phasing PDB_EXTRACT data extraction REFMAC refinement XSCALE data reduction