4TT3

The Pathway of Binding of the Intrinsically Disordered Mitochondrial Inhibitor Protein to F1-ATPase


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2V7Q 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH8.2295PEG 4000, Tris-HCl, magnesium chloride, EDTA, ATP, NaCl, spermidine
Crystal Properties
Matthews coefficientSolvent content
3.1661.11

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.385α = 90
b = 154.545β = 90
c = 272.04γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-2252012-11-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.8726ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.2167.1297.50.0787.62.573010
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.213.2899.12.32.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2v7q3.21136.0272985368896.710.24430.24220.2834RANDOM93.079
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.323.38-1.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.045
r_dihedral_angle_3_deg10.612
r_dihedral_angle_4_deg9.464
r_dihedral_angle_1_deg3.665
r_mcangle_it1.691
r_mcbond_it0.946
r_mcbond_other0.945
r_angle_refined_deg0.732
r_angle_other_deg0.655
r_chiral_restr0.064
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.045
r_dihedral_angle_3_deg10.612
r_dihedral_angle_4_deg9.464
r_dihedral_angle_1_deg3.665
r_mcangle_it1.691
r_mcbond_it0.946
r_mcbond_other0.945
r_angle_refined_deg0.732
r_angle_other_deg0.655
r_chiral_restr0.064
r_bond_refined_d0.004
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms23918
Nucleic Acid Atoms
Solvent Atoms11
Heterogen Atoms181

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
Cootmodel building
PDB_EXTRACTdata extraction
MOSFLMdata reduction