4TSF

The Pathway of Binding of the Intrinsically Disordered Mitochondrial Inhibitor Protein to F1-ATPase


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2V7QPDB entry 2v7q

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH8.2295Tris-HCl, PEG 4000, magnesium chloride, EDTA, NaCl, spermidine
Crystal Properties
Matthews coefficientSolvent content
3.1460.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.015α = 90
b = 154.42β = 90
c = 269.465γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2012-09-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.99988SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.262.8192.20.0857.22.168526
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.2793.90.2870.7712.524565

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2v7q3.2134.7368448338691.090.23640.23450.2724RANDOM78.827
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.043.09-3.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.987
r_dihedral_angle_3_deg10.679
r_dihedral_angle_4_deg9.533
r_dihedral_angle_1_deg3.682
r_mcangle_it1.35
r_mcbond_it0.743
r_mcbond_other0.743
r_angle_refined_deg0.721
r_angle_other_deg0.641
r_chiral_restr0.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.987
r_dihedral_angle_3_deg10.679
r_dihedral_angle_4_deg9.533
r_dihedral_angle_1_deg3.682
r_mcangle_it1.35
r_mcbond_it0.743
r_mcbond_other0.743
r_angle_refined_deg0.721
r_angle_other_deg0.641
r_chiral_restr0.04
r_bond_refined_d0.004
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms23707
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms170

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
Cootmodel building
PDB_EXTRACTdata extraction