☰ Navigation Tabs
Structural basis of cellular dNTP regulation, SAMHD1-dGTP-dGTP-dCTP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BZB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 298 SPG buffer, PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.38 48.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.411 α = 90 b = 146.032 β = 114.52 c = 98.106 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 40 96.8 0.083 9.4 3.7 109505
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 93.6 0.694 1 2.9 5300
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4BZB 2.2 40 109469 5528 96.17 0.1699 0.1681 0.2037 0.1954 RANDOM 56.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.99 -0.62 -2.54 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.716 r_dihedral_angle_4_deg 17.387 r_dihedral_angle_3_deg 16.297 r_dihedral_angle_1_deg 5.331 r_mcangle_it 5.111 r_mcbond_it 3.592 r_mcbond_other 3.591 r_angle_refined_deg 1.704 r_angle_other_deg 1.326 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.716 r_dihedral_angle_4_deg 17.387 r_dihedral_angle_3_deg 16.297 r_dihedral_angle_1_deg 5.331 r_mcangle_it 5.111 r_mcbond_it 3.592 r_mcbond_other 3.591 r_angle_refined_deg 1.704 r_angle_other_deg 1.326 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15732 Nucleic Acid Atoms Solvent Atoms 490 Heterogen Atoms 368
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling