X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1OLM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.2M Magnesium Chloride -- 0.1M tris pH 8.5 -- 25%(w/v) PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.652.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.185α = 90
b = 79.495β = 95.18
c = 82.395γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2013-08-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.92DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7737.3395.50.08917.27.364088418.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1OLM1.7737.3383615442595.390.141180.138430.19425RANDOM27.583
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.57-0.22-0.080.68
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free33.531
r_dihedral_angle_2_deg32.935
r_dihedral_angle_4_deg17.019
r_sphericity_bonded16.857
r_dihedral_angle_3_deg11.619
r_long_range_B_refined5.704
r_long_range_B_other5.704
r_dihedral_angle_1_deg5.549
r_scangle_other5.209
r_mcangle_it4.457
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free33.531
r_dihedral_angle_2_deg32.935
r_dihedral_angle_4_deg17.019
r_sphericity_bonded16.857
r_dihedral_angle_3_deg11.619
r_long_range_B_refined5.704
r_long_range_B_other5.704
r_dihedral_angle_1_deg5.549
r_scangle_other5.209
r_mcangle_it4.457
r_mcangle_other4.457
r_scbond_it4.33
r_scbond_other4.33
r_mcbond_it3.683
r_mcbond_other3.682
r_rigid_bond_restr2.411
r_angle_refined_deg1.286
r_angle_other_deg0.803
r_chiral_restr0.083
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6182
Nucleic Acid Atoms
Solvent Atoms461
Heterogen Atoms130

Software

Software
Software NamePurpose
REFMACrefinement