☰ Navigation Tabs
IspG in complex with Intermediate II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4S38
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M BIS-TRIS PROPANE, 20% PEG3350, 0.2 M Na2SO4 , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.68 54.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.09 α = 90 b = 62.1 β = 127.1 c = 86.14 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 98.6 0.044 14.6 3 43658 43047 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 98 0.468 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4S38 1.8 15 43046 40893 2153 99 0.15296 0.15051 0.1617 0.20011 0.2124 RANDOM 32.831
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.44 -0.45 2.82 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.483 r_sphericity_free 27.303 r_dihedral_angle_4_deg 17.771 r_dihedral_angle_3_deg 14.781 r_sphericity_bonded 9.041 r_dihedral_angle_1_deg 5.314 r_scangle_other 4.488 r_long_range_B_refined 4.382 r_long_range_B_other 4.326 r_scbond_it 3.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.483 r_sphericity_free 27.303 r_dihedral_angle_4_deg 17.771 r_dihedral_angle_3_deg 14.781 r_sphericity_bonded 9.041 r_dihedral_angle_1_deg 5.314 r_scangle_other 4.488 r_long_range_B_refined 4.382 r_long_range_B_other 4.326 r_scbond_it 3.96 r_scbond_other 3.958 r_mcangle_it 3.372 r_mcangle_other 3.371 r_rigid_bond_restr 3.104 r_mcbond_it 2.851 r_mcbond_other 2.84 r_angle_refined_deg 2.295 r_angle_other_deg 1.301 r_chiral_restr 0.092 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3076 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 24
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing