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IspG in complex with Intermediate I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4S38
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M BIS-TRIS PROPANE, 20% PEG3350, 0.2 M Na2SO4 , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.53 α = 90 b = 61.63 β = 127.03 c = 86.16 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 98.8 0.041 15 3 61825 61083 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 98.9 0.45 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4S38 1.6 10 61082 58027 3055 99.13 0.12092 0.11882 0.1243 0.16014 0.1644 RANDOM 26.484
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 -0.39 1.57 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.629 r_sphericity_free 32.672 r_dihedral_angle_4_deg 18.875 r_sphericity_bonded 15.873 r_dihedral_angle_3_deg 13.837 r_scangle_other 7.2 r_long_range_B_refined 6.707 r_long_range_B_other 6.707 r_scbond_it 6.147 r_scbond_other 6.144
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.629 r_sphericity_free 32.672 r_dihedral_angle_4_deg 18.875 r_sphericity_bonded 15.873 r_dihedral_angle_3_deg 13.837 r_scangle_other 7.2 r_long_range_B_refined 6.707 r_long_range_B_other 6.707 r_scbond_it 6.147 r_scbond_other 6.144 r_dihedral_angle_1_deg 5.45 r_mcangle_it 4.696 r_mcangle_other 4.696 r_mcbond_it 3.719 r_mcbond_other 3.71 r_rigid_bond_restr 3.256 r_angle_refined_deg 2.423 r_angle_other_deg 1.335 r_chiral_restr 0.134 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3076 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 36
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing