☰ Navigation Tabs
IspG in complex with HMBPP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4S38
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M BIS-TRIS PROPANE, 20% PEG3350, 0.2 M Na2SO4, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.7 54.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.38 α = 90 b = 62.6 β = 127.33 c = 86.25 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 30 98.9 0.036 14.9 2.9 116077 114800 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.4 98.6 0.52 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4S38 1.3 10 114799 109059 5740 99.2 0.11257 0.11142 0.1127 0.13388 0.1368 RANDOM 22.295
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 -0.38 2.22 -0.55
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 57.424 r_dihedral_angle_2_deg 37.045 r_sphericity_bonded 17.005 r_dihedral_angle_4_deg 16.617 r_dihedral_angle_3_deg 12.812 r_scangle_other 8.67 r_long_range_B_refined 7.754 r_long_range_B_other 6.864 r_scbond_it 6.56 r_scbond_other 6.56
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 57.424 r_dihedral_angle_2_deg 37.045 r_sphericity_bonded 17.005 r_dihedral_angle_4_deg 16.617 r_dihedral_angle_3_deg 12.812 r_scangle_other 8.67 r_long_range_B_refined 7.754 r_long_range_B_other 6.864 r_scbond_it 6.56 r_scbond_other 6.56 r_rigid_bond_restr 6.385 r_dihedral_angle_1_deg 5.648 r_mcangle_it 3.517 r_mcangle_other 3.516 r_mcbond_it 2.944 r_mcbond_other 2.907 r_angle_refined_deg 2.838 r_angle_other_deg 1.535 r_chiral_restr 0.241 r_bond_refined_d 0.027 r_gen_planes_refined 0.012 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3072 Nucleic Acid Atoms Solvent Atoms 461 Heterogen Atoms 41
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling