X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52950.1 M MES, pH 5.5, 0.2 M ammonium acetate, 16% PEG 4000, 1 mM TDP, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
3.1761.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 134.214α = 90
b = 134.214β = 90
c = 132.293γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300HS2014-06-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.74016056

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.7401605685599.90.209920.207970.24688RANDOM60.047
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.79-1.793.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.84
r_dihedral_angle_4_deg16.888
r_dihedral_angle_3_deg15.137
r_dihedral_angle_1_deg5.448
r_long_range_B_refined4.748
r_long_range_B_other4.743
r_angle_other_deg3.661
r_scangle_other2.667
r_mcangle_it2.527
r_mcangle_other2.526
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.84
r_dihedral_angle_4_deg16.888
r_dihedral_angle_3_deg15.137
r_dihedral_angle_1_deg5.448
r_long_range_B_refined4.748
r_long_range_B_other4.743
r_angle_other_deg3.661
r_scangle_other2.667
r_mcangle_it2.527
r_mcangle_other2.526
r_scbond_it1.548
r_scbond_other1.52
r_mcbond_it1.469
r_mcbond_other1.469
r_angle_refined_deg0.973
r_chiral_restr0.055
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_gen_planes_other0.002
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3232
Nucleic Acid Atoms
Solvent Atoms8
Heterogen Atoms26

Software

Software
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling