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Cyrstal structure of SLIT-ROBO Rho GTPase-activating protein 2 fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.25 277 2.35M Ammonium Sulphate; 0.1M MES, pH 6.25, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.18 43.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.51 α = 90 b = 31.35 β = 113.07 c = 62.83 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 57.81 95 0.118 9.09 6.5 18910 18107 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.84 0.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.73 57.81 18910 17127 980 95.91 0.19 0.19054 0.18865 0.1992 0.22216 0.2318 RANDOM 27.942
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.32 0.59 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.771 r_dihedral_angle_4_deg 19.813 r_long_range_B_other 15.388 r_long_range_B_refined 15.324 r_scangle_other 11.739 r_dihedral_angle_3_deg 11.67 r_scbond_it 8.95 r_scbond_other 8.893 r_mcangle_it 8.232 r_mcangle_other 8.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.771 r_dihedral_angle_4_deg 19.813 r_long_range_B_other 15.388 r_long_range_B_refined 15.324 r_scangle_other 11.739 r_dihedral_angle_3_deg 11.67 r_scbond_it 8.95 r_scbond_other 8.893 r_mcangle_it 8.232 r_mcangle_other 8.227 r_dihedral_angle_1_deg 7.456 r_mcbond_other 5.629 r_mcbond_it 5.628 r_angle_refined_deg 1.609 r_angle_other_deg 1.07 r_chiral_restr 0.116 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1317 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms
Software Software Software Name Purpose EDNA data collection BALBES phasing REFMAC refinement XDS data reduction XDS data scaling