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Human Sirt2 in complex with SirReal2 and Ac-Lys-H3 peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 2.8 M ammonium sulfate, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.07 40.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.994 α = 90 b = 73.302 β = 95.23 c = 55.291 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 55.06 99.6 53705 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 99.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.42 44.02 51021 2658 99.59 0.18103 0.18066 0.1803 0.18797 0.1877 RANDOM 21.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.45 0.01 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.191 r_dihedral_angle_4_deg 18.455 r_dihedral_angle_3_deg 13.498 r_dihedral_angle_1_deg 5.603 r_long_range_B_refined 4.173 r_long_range_B_other 4.024 r_scangle_other 2.147 r_mcangle_it 1.708 r_mcangle_other 1.708 r_angle_refined_deg 1.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.191 r_dihedral_angle_4_deg 18.455 r_dihedral_angle_3_deg 13.498 r_dihedral_angle_1_deg 5.603 r_long_range_B_refined 4.173 r_long_range_B_other 4.024 r_scangle_other 2.147 r_mcangle_it 1.708 r_mcangle_other 1.708 r_angle_refined_deg 1.331 r_scbond_it 1.319 r_scbond_other 1.319 r_mcbond_it 1.033 r_mcbond_other 1.033 r_angle_other_deg 0.798 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2333 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 30
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction Aimless data scaling