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Crystal structure of the N-terminal beta-barrel domain of Pseudomonas aeruginosa OprF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 292 33% PEG200, 0.2 M ammonium sulfate, 0.02 M sodium chloride, 0.02 M sodium citrate, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 1.94 36.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.009 α = 90 b = 26.779 β = 95.79 c = 54.892 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97957 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 54.612 99.6 20209
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 99.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 54.61 19182 1022 99.39 0.19065 0.18853 0.1993 0.22879 0.2351 RANDOM 30.718
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 -0.42 4.6 -2.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.637 r_dihedral_angle_3_deg 13.358 r_dihedral_angle_4_deg 11.827 r_long_range_B_refined 8.135 r_long_range_B_other 8.133 r_dihedral_angle_1_deg 7.247 r_scangle_other 6.184 r_scbond_it 4.021 r_scbond_other 4.018 r_mcangle_it 2.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.637 r_dihedral_angle_3_deg 13.358 r_dihedral_angle_4_deg 11.827 r_long_range_B_refined 8.135 r_long_range_B_other 8.133 r_dihedral_angle_1_deg 7.247 r_scangle_other 6.184 r_scbond_it 4.021 r_scbond_other 4.018 r_mcangle_it 2.839 r_mcangle_other 2.838 r_angle_refined_deg 2.04 r_mcbond_it 1.929 r_mcbond_other 1.927 r_angle_other_deg 0.802 r_chiral_restr 0.13 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1045 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 87
Software Software Software Name Purpose GDA data collection MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling