X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52929% PEG8000, 0.04 M zinc acetate, 0.05 M ADA, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.6353.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 145.774α = 90
b = 63.26β = 119.7
c = 73.668γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2014-07-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9795DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.763.9999.716167
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.8399.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.763.991538877899.610.234970.232580.27806RANDOM71.95
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.570.692.02-0.75
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.452
r_dihedral_angle_4_deg19.898
r_dihedral_angle_3_deg19.586
r_long_range_B_refined9.4
r_long_range_B_other9.399
r_dihedral_angle_1_deg7.406
r_scangle_other6.912
r_mcangle_it5.52
r_mcangle_other5.519
r_scbond_it4.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.452
r_dihedral_angle_4_deg19.898
r_dihedral_angle_3_deg19.586
r_long_range_B_refined9.4
r_long_range_B_other9.399
r_dihedral_angle_1_deg7.406
r_scangle_other6.912
r_mcangle_it5.52
r_mcangle_other5.519
r_scbond_it4.39
r_scbond_other4.389
r_mcbond_it3.677
r_mcbond_other3.677
r_angle_refined_deg1.586
r_angle_other_deg0.965
r_chiral_restr0.097
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3139
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
GDAdata collection
MOLREPphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling