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Spore photoproduct lyase C140A/S76C mutant with bound AdoMet and dinucleoside spore photoproduct
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 200 mM lithium sulfate, 100 mM Tris-HCl, 19-27% PEG800, 70 mM HEGA-8, anaerobic conditions, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.38 48.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.44 α = 90 b = 58.56 β = 90 c = 130.96 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.07169 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 49.53 99 13108 13108 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 98.9 0.458
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 49.53 12449 12449 659 98.97 0.26693 0.26693 0.26384 0.2143 0.3249 0.2696 RANDOM 45.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.1 -4.22 -1.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.138 r_dihedral_angle_3_deg 13.543 r_dihedral_angle_4_deg 10.73 r_dihedral_angle_1_deg 5.264 r_long_range_B_refined 3.858 r_long_range_B_other 3.858 r_mcangle_it 2.108 r_mcangle_other 2.107 r_scangle_other 1.867 r_mcbond_it 1.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.138 r_dihedral_angle_3_deg 13.543 r_dihedral_angle_4_deg 10.73 r_dihedral_angle_1_deg 5.264 r_long_range_B_refined 3.858 r_long_range_B_other 3.858 r_mcangle_it 2.108 r_mcangle_other 2.107 r_scangle_other 1.867 r_mcbond_it 1.221 r_mcbond_other 1.221 r_scbond_it 1.08 r_scbond_other 1.08 r_angle_refined_deg 0.999 r_angle_other_deg 0.9 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2801 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 99
Software Software Software Name Purpose HEIDI data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling