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Crystal Structure of TR3 LBD_L449W in complex with Molecule 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.2 277 PEG4000, Sodium citrate, Glycerol, pH 4.2, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.18 61.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.2 α = 90 b = 76.843 β = 90 c = 128.079 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2013-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 0.98
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 98.9 0.064 13.8 4.6 43430 42959 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 99.8 0.375 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 2.1 37.03 43430 40721 2150 98.84 0.18947 0.1873 0.1947 0.22974 0.233 RANDOM 36.842
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 0.28 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.854 r_dihedral_angle_4_deg 21.271 r_dihedral_angle_3_deg 13.47 r_dihedral_angle_1_deg 5.712 r_mcangle_it 5 r_scbond_it 4.721 r_mcbond_it 3.557 r_mcbond_other 3.556 r_angle_refined_deg 1.872 r_angle_other_deg 1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.854 r_dihedral_angle_4_deg 21.271 r_dihedral_angle_3_deg 13.47 r_dihedral_angle_1_deg 5.712 r_mcangle_it 5 r_scbond_it 4.721 r_mcbond_it 3.557 r_mcbond_other 3.556 r_angle_refined_deg 1.872 r_angle_other_deg 1.33 r_chiral_restr 0.108 r_bond_refined_d 0.02 r_gen_planes_refined 0.012 r_bond_other_d 0.006 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3649 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 40
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction