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Crystal structure of VmoLac in P64 space group
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 protein concentration = 20mg/mL, 100 mM Tris, pH 8.5, 1.5 M ammonium sulphate, 12 % v/v glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.85 68.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 174.96 α = 90 b = 174.96 β = 90 c = 62.07 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.95373 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.01 100 100625 3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 48.01 95593 5032 99.99 0.13152 0.13001 0.144 0.16007 0.1706 RANDOM 22.245
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.207 r_dihedral_angle_4_deg 19.152 r_dihedral_angle_3_deg 12.467 r_long_range_B_refined 8.294 r_long_range_B_other 7.697 r_dihedral_angle_1_deg 5.908 r_scangle_other 5.171 r_scbond_it 3.535 r_scbond_other 3.534 r_mcangle_it 2.375
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.207 r_dihedral_angle_4_deg 19.152 r_dihedral_angle_3_deg 12.467 r_long_range_B_refined 8.294 r_long_range_B_other 7.697 r_dihedral_angle_1_deg 5.908 r_scangle_other 5.171 r_scbond_it 3.535 r_scbond_other 3.534 r_mcangle_it 2.375 r_mcangle_other 2.375 r_angle_refined_deg 2.15 r_mcbond_it 1.806 r_mcbond_other 1.801 r_angle_other_deg 0.959 r_chiral_restr 0.14 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5003 Nucleic Acid Atoms Solvent Atoms 993 Heterogen Atoms 48
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling