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Crystal structure of dimeric S33C beta-2 microglobulin mutant at 1.4 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 28% v/v PEG400, 0.2 M calcium chloride dihydrate, 0.1 M HEPES sodium, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.94 36.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.349 α = 90 b = 47.704 β = 90 c = 119.65 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS 6M bent cylindrical mirror 2014-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.976256 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 59.825 98.7 0.065 10.9 4.5 18734 18491 8.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 86.6 0.495 1.9 3.4 787
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 59.825 18734 17542 912 98.57 0.16851 0.16851 0.16625 0.20944 0.2126 RANDOM 16.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.16 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.818 r_dihedral_angle_4_deg 15.691 r_dihedral_angle_3_deg 12.853 r_sphericity_free 8.777 r_dihedral_angle_1_deg 7.097 r_rigid_bond_restr 5.997 r_sphericity_bonded 4.918 r_scbond_it 2.604 r_long_range_B_refined 2.547 r_scbond_other 2.455
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.818 r_dihedral_angle_4_deg 15.691 r_dihedral_angle_3_deg 12.853 r_sphericity_free 8.777 r_dihedral_angle_1_deg 7.097 r_rigid_bond_restr 5.997 r_sphericity_bonded 4.918 r_scbond_it 2.604 r_long_range_B_refined 2.547 r_scbond_other 2.455 r_long_range_B_other 2.441 r_angle_other_deg 2.336 r_scangle_other 2.299 r_angle_refined_deg 1.919 r_mcbond_it 1.91 r_mcangle_other 1.907 r_mcangle_it 1.872 r_mcbond_other 1.871 r_chiral_restr 0.113 r_bond_refined_d 0.02 r_gen_planes_other 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 828 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms
Software Software Software Name Purpose MxCuBE data collection BALBES phasing REFMAC refinement XDS data reduction Aimless data scaling