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Crystal structure of the ternary complex of sp-ASADH with NADP and 1,2,3-Benzenetricarboxylic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 15-22% PEG 3350, 0.1 M sodium acetate, 0.1 M MES (pH 6.5), 3% Ethylene glycol, 10 mM TCEP, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.27 45.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.536 α = 90 b = 97.658 β = 102.55 c = 63.978 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD double crystal monochromator and K-B pair of biomorph mirrors 2012-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.033 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 95.3 0.061 18.85 3.2 155700 148393 1.3 14.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 65.3 0.538 1.3 1.3 10112
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.35 50 148393 140914 7440 95.12 0.13225 0.13071 0.1306 0.1613 0.1615 RANDOM 19.243
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -1.05 0.45 0.47
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.113 r_dihedral_angle_2_deg 33.287 r_dihedral_angle_4_deg 20.144 r_sphericity_bonded 14.636 r_dihedral_angle_3_deg 11.704 r_dihedral_angle_1_deg 6.118 r_long_range_B_refined 4.832 r_long_range_B_other 4.832 r_scangle_other 4.808 r_scbond_it 4.119
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.113 r_dihedral_angle_2_deg 33.287 r_dihedral_angle_4_deg 20.144 r_sphericity_bonded 14.636 r_dihedral_angle_3_deg 11.704 r_dihedral_angle_1_deg 6.118 r_long_range_B_refined 4.832 r_long_range_B_other 4.832 r_scangle_other 4.808 r_scbond_it 4.119 r_scbond_other 4.119 r_mcangle_other 2.995 r_mcangle_it 2.993 r_rigid_bond_restr 2.814 r_mcbond_it 2.273 r_mcbond_other 2.255 r_angle_refined_deg 1.647 r_angle_other_deg 0.808 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5366 Nucleic Acid Atoms Solvent Atoms 349 Heterogen Atoms 213
Software Software Software Name Purpose REFMAC refinement