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Crystal structure of YDR533Cp
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 295 35-40% PEG 2000, 100 mM SODIUM ACETATE, 200 mM AMMONIUM ACETATE, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.04 39.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.283 α = 90 b = 68.786 β = 90 c = 137.216 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 68.6 99.6 0.076 29.6 6.3 24700 24700 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 98.9 0.697 2.6 6.2 2409
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.69 68.6 24664 24664 2488 99.1 0.19637 0.19637 0.19228 0.2007 0.23334 0.2399 RANDOM 27.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.04 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.299 r_dihedral_angle_4_deg 20.849 r_dihedral_angle_3_deg 14.301 r_dihedral_angle_1_deg 6.779 r_long_range_B_refined 5.583 r_long_range_B_other 5.515 r_angle_refined_deg 1.524 r_scangle_other 1.369 r_mcangle_it 1.073 r_mcangle_other 1.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.299 r_dihedral_angle_4_deg 20.849 r_dihedral_angle_3_deg 14.301 r_dihedral_angle_1_deg 6.779 r_long_range_B_refined 5.583 r_long_range_B_other 5.515 r_angle_refined_deg 1.524 r_scangle_other 1.369 r_mcangle_it 1.073 r_mcangle_other 1.072 r_angle_other_deg 0.855 r_scbond_it 0.853 r_scbond_other 0.853 r_mcbond_it 0.659 r_mcbond_other 0.648 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1798 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling