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CdsD - The structural protein of the Type III secretion system of Chlamydia trachomatis: C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 50 mM MES; pH 6.5 - 22.5 % PEG-smear - 0.5 M ammonium sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.507 α = 90 b = 49.429 β = 92.79 c = 76.927 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2012-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30.3 99.8 12058 12034 4 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30.3 12034 11365 550 86 0.19474 0.19474 0.19228 0.24477 0.273 RANDOM 10.484
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.51 -2 9.93 -4.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.874 r_dihedral_angle_4_deg 22.885 r_dihedral_angle_3_deg 15.919 r_dihedral_angle_1_deg 6.148 r_long_range_B_refined 5.353 r_long_range_B_other 5.302 r_angle_refined_deg 1.973 r_scangle_other 1.805 r_mcangle_it 1.482 r_mcangle_other 1.482
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.874 r_dihedral_angle_4_deg 22.885 r_dihedral_angle_3_deg 15.919 r_dihedral_angle_1_deg 6.148 r_long_range_B_refined 5.353 r_long_range_B_other 5.302 r_angle_refined_deg 1.973 r_scangle_other 1.805 r_mcangle_it 1.482 r_mcangle_other 1.482 r_scbond_it 1.12 r_scbond_other 1.115 r_angle_other_deg 1.013 r_mcbond_it 0.901 r_mcbond_other 0.9 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1571 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 10
Software Software Software Name Purpose PROTEUM PLUS data collection MOLREP phasing REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling