☰ Navigation Tabs
Crystal structure of human TLR8 in complex with DS-802
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.8 293 12%(w/v) PEG3350, 0.1M sodium citrate, 0.3M potassium formate, pH 4.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 51.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.153 α = 90 b = 156.716 β = 77.1 c = 86.156 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2013-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0000 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.5 0.111 19.4 3.7 124522
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 26.38 118767 6273 99.08 0.21217 0.20944 0.2178 0.26416 0.2703 RANDOM 39.182
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.05 r_dihedral_angle_4_deg 17.653 r_dihedral_angle_3_deg 16.544 r_long_range_B_other 7.54 r_long_range_B_refined 7.537 r_dihedral_angle_1_deg 7.349 r_scangle_other 6.005 r_mcangle_it 4.518 r_mcangle_other 4.518 r_scbond_it 4.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.05 r_dihedral_angle_4_deg 17.653 r_dihedral_angle_3_deg 16.544 r_long_range_B_other 7.54 r_long_range_B_refined 7.537 r_dihedral_angle_1_deg 7.349 r_scangle_other 6.005 r_mcangle_it 4.518 r_mcangle_other 4.518 r_scbond_it 4.114 r_scbond_other 4.114 r_mcbond_it 3.397 r_mcbond_other 3.396 r_angle_refined_deg 1.943 r_angle_other_deg 1.132 r_chiral_restr 0.108 r_gen_planes_refined 0.01 r_bond_refined_d 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12122 Nucleic Acid Atoms Solvent Atoms 506 Heterogen Atoms 435
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling