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mTFP*: a robust and versatile host protein at 1.00 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HQK pdb entry 2HQK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 25.9% PEG3000, 100mM MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.02 39.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.52 α = 90 b = 85.17 β = 100.32 c = 63.14 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 10 94.9 0.036 15.6 2.7 215374 204329 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.1 88.1 0.335 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2HQK 1 10 2 204328 194111 10217 94.89 0.13175 0.1308 0.1401 0.14995 0.1577 RANDOM 12.239
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.13 -0.29 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.435 r_sphericity_free 25.812 r_dihedral_angle_4_deg 15.758 r_dihedral_angle_3_deg 12.373 r_sphericity_bonded 7.164 r_dihedral_angle_1_deg 6.987 r_long_range_B_refined 3.112 r_long_range_B_other 2.376 r_rigid_bond_restr 2.375 r_angle_refined_deg 1.668
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.435 r_sphericity_free 25.812 r_dihedral_angle_4_deg 15.758 r_dihedral_angle_3_deg 12.373 r_sphericity_bonded 7.164 r_dihedral_angle_1_deg 6.987 r_long_range_B_refined 3.112 r_long_range_B_other 2.376 r_rigid_bond_restr 2.375 r_angle_refined_deg 1.668 r_scangle_other 1.648 r_scbond_it 1.391 r_scbond_other 1.38 r_mcangle_it 1.209 r_mcangle_other 1.209 r_mcbond_it 0.986 r_mcbond_other 0.985 r_angle_other_deg 0.781 r_chiral_restr 0.098 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3556 Nucleic Acid Atoms Solvent Atoms 761 Heterogen Atoms
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling