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High-resolution crystal structure of Coxsackievirus A24v
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 200 mM Magnesium chloride, 3.4 M 1,6-Hexanediol, 100 mM HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 306.556 α = 90 b = 366.509 β = 90 c = 368.101 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976300 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 29.891 92.1 3983086 3666980 -3 -3
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.4 29.89 3983086 3666966 92.09 0.14994 0.14994 18.434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.14 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.075 r_dihedral_angle_4_deg 15.291 r_dihedral_angle_3_deg 11.049 r_dihedral_angle_1_deg 7.746 r_long_range_B_refined 4.315 r_long_range_B_other 3.912 r_scangle_other 2.414 r_scbond_it 1.572 r_scbond_other 1.566 r_mcangle_it 1.499
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.075 r_dihedral_angle_4_deg 15.291 r_dihedral_angle_3_deg 11.049 r_dihedral_angle_1_deg 7.746 r_long_range_B_refined 4.315 r_long_range_B_other 3.912 r_scangle_other 2.414 r_scbond_it 1.572 r_scbond_other 1.566 r_mcangle_it 1.499 r_mcangle_other 1.492 r_angle_refined_deg 1.129 r_mcbond_it 1.019 r_mcbond_other 1.015 r_angle_other_deg 0.714 r_chiral_restr 0.068 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6521 Nucleic Acid Atoms Solvent Atoms 814 Heterogen Atoms 32
Software Software Software Name Purpose ISPyB data collection PYMOL model building REFMAC refinement XDS data reduction XSCALE data scaling PYMOL phasing