☰ Navigation Tabs
Neutron structure of human transthyretin (TTR) at room temperature to 2.0A resolution (Laue)
NEUTRON DIFFRACTION - X-RAY DIFFRACTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.4 293 2.15M SODIUM MALONATE, 23MG/ML PROTEIN, pH 6.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.21 44.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.68 α = 90 b = 86.26 β = 90 c = 65.72 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 neutron 293 IMAGE PLATE LADI-III 2010-05-12 L LAUE 2 1 x-ray 293 CCD ADSC QUANTUM 315r 2011-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 NUCLEAR REACTOR OTHER 3.18-4.22 2 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9791 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 43.68 78.3 0.182 7.3 5.1 17216 13480 2 2 2 1.85 43.13 99.4 0.093 7.4 3.5 21718 2 19.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 0.337 3.4 4 1524 2 1.85 1.95 0.42 2.67 3.49
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B NEUTRON DIFFRACTION 2 36.378 1.46 13391 1341 76.93 0.2147 0.2086 0.2709 X-RAY DIFFRACTION 1.95 43.13 1.34 18655 1867 99.44 0.1577 0.1529 0.1597 0.2025 0.2048 25.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.0713 0.4593 0.612 -0.3074 -0.0845 0.392
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.929 f_angle_d 1.354 f_chiral_restr 0.082 f_bond_d 0.013 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1801 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms
Software Software Software Name Purpose QLD data collection PHENIX model building PHENIX refinement LAUEGEN data reduction LSCALE data scaling SCALA data scaling PHENIX phasing