☰ Navigation Tabs
URATE OXIDASE DI-AZIDE complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OQC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH METHOD 8.5 291 MIXING TWO SOLUTIONS A & B: SOLUTION A: PROTEIN (20 MG/ML) TRIS ACETATE BUFFER 0.05 M PH=8.5. SOLUTION B: TRIS ACETATE BUFFER 0.05 M + SODIUM AZIDE 0.3M. CRYSTALS HARVESTED 2 MONTHS AFTER CRYSTALLIZATION (AGED CRYSTALS), BATCH METHOD, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.92 57.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.18 α = 90 b = 94.92 β = 90 c = 104.53 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M BENT MIRROR 2014-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.938 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 20 98.8 0.072 4.7 97678 66686 2 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.34 99 0.217 4.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS 4OQC 1.3 20 4 97678 66686 98.8 0.2108 0.1762 0.1762 0.1806
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 6 2261.5 2603
RMS Deviations Key Refinement Restraint Deviation s_angle_d 0.075 s_non_zero_chiral_vol 0.073 s_anti_bump_dis_restr 0.071 s_zero_chiral_vol 0.069 s_similar_adp_cmpnt 0.06 s_bond_d 0.03 s_from_restr_planes 0.0291 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2362 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 10
Software Software Software Name Purpose MxCuBE data collection SHELX model building SHELXL-97 refinement XDS data reduction SCALA data scaling TRUNCATE data scaling SHELXDE phasing