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Structure of cutinase from Trichoderma reesei in its native form.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CEX PDB ENTRY 1CEX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 293 mixing 300 nl enzyme at 10 mg/ml with 100 nl of PEG3350 (25%), Sodium Chloride (0.2 M), BIS-TRIS (0.1 M), pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.85 33.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.159 α = 90 b = 48.002 β = 90 c = 141.579 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 79.32 91 0.075 12.3 3.9 81001
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CEX 1.15 79.32 76957 68635 3556 97.9 0.147 0.146 0.167 0.157 RANDOM 10.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.16 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.773 r_sphericity_free 22.351 r_dihedral_angle_4_deg 13.817 r_dihedral_angle_3_deg 11.773 r_sphericity_bonded 6.971 r_rigid_bond_restr 6.616 r_dihedral_angle_1_deg 5.668 r_angle_refined_deg 1.951 r_angle_other_deg 1.121 r_chiral_restr 0.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.773 r_sphericity_free 22.351 r_dihedral_angle_4_deg 13.817 r_dihedral_angle_3_deg 11.773 r_sphericity_bonded 6.971 r_rigid_bond_restr 6.616 r_dihedral_angle_1_deg 5.668 r_angle_refined_deg 1.951 r_angle_other_deg 1.121 r_chiral_restr 0.136 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1603 Nucleic Acid Atoms Solvent Atoms 289 Heterogen Atoms 6
Software Software Software Name Purpose PROTEUM PLUS data collection MOLREP phasing REFMAC refinement XDS data reduction SCALA data scaling