☰ Navigation Tabs
Crystal structure of an inhibitor of vertebrate lysozyme (PA3902) from Pseudomonas aeruginosa PAO1 at 1.25 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 0.2M ammonium acetate, 30.0% polyethylene glycol 4000, 0.1M sodium acetate pH 4.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.94 36.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.449 α = 90 b = 47.057 β = 96.91 c = 36.389 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) 2013-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 36.126 84.9 0.073 15.57 26432 -3 9.938
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.29 23.4 0.613 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.25 36.126 26429 1326 85.84 0.1185 0.1161 0.1285 0.1639 0.1698 RANDOM 14.0087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 0.1 0.21 0.26
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 30.03 r_dihedral_angle_2_deg 29.233 r_dihedral_angle_3_deg 10.705 r_dihedral_angle_4_deg 9.421 r_sphericity_bonded 8.731 r_dihedral_angle_1_deg 5.517 r_mcangle_it 1.611 r_rigid_bond_restr 1.464 r_angle_refined_deg 1.317 r_mcbond_it 1.27
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 30.03 r_dihedral_angle_2_deg 29.233 r_dihedral_angle_3_deg 10.705 r_dihedral_angle_4_deg 9.421 r_sphericity_bonded 8.731 r_dihedral_angle_1_deg 5.517 r_mcangle_it 1.611 r_rigid_bond_restr 1.464 r_angle_refined_deg 1.317 r_mcbond_it 1.27 r_mcbond_other 1.27 r_angle_other_deg 0.759 r_chiral_restr 0.088 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1023 Nucleic Acid Atoms Solvent Atoms 300 Heterogen Atoms
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing XSCALE data scaling REFMAC refinement XDS data reduction SHELXD phasing